Super Enhancer Details

General details

Super-Enhancer ID:	SE_00639
Genomic locus:	chr3:69130810-69156003
Size/Length:	25193 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006407
Gene Symbol:	ARL6IP5
Chromosome:	chr3
TSS:	69134089 (Transcription start site)
TES:	69155239 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00639

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004180	SE_00639	chr3	69130810	69145720	14910	3100
C004181	SE_00639	chr3	69148422	69150299	1877	176.4
C004182	SE_00639	chr3	69153686	69156003	2317	489.24