Super Enhancer Details

General details

Super-Enhancer ID:	SE_00640
Genomic locus:	chr19:41297907-41340429
Size/Length:	42522 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_053046
Gene Symbol:	EGLN2
Chromosome:	chr19
TSS:	41305333 (Transcription start site)
TES:	41314346 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:41297907-41340429
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00640

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003035	SE_00640	chr19	41297907	41299183	1276	201.26
C003036	SE_00640	chr19	41303338	41314777	11439	2991.59
C003037	SE_00640	chr19	41315669	41318059	2390	1011.21
C003038	SE_00640	chr19	41323706	41325913	2207	189.25
C003039	SE_00640	chr19	41326696	41331381	4685	453
C003040	SE_00640	chr19	41335608	41340429	4821	2629.93