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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00641
Genomic locus: chr18:20792312-20846605
Size/Length: 54293 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_023359
Gene Symbol: CABLES1
Chromosome: chr18
TSS: 20715726 (Transcription start site)
TES: 20840434 (Transcription end site)
Strand: +
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00641

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002822 SE_00641 chr18 20792312 20793879 1567 264.87
C002823 SE_00641 chr18 20804830 20812818 7988 2943.7
C002824 SE_00641 chr18 20816576 20819793 3217 2018.55
C002825 SE_00641 chr18 20823098 20825011 1913 185.12
C002826 SE_00641 chr18 20829909 20832050 2141 634.26
C002827 SE_00641 chr18 20836286 20841335 5049 3100
C002828 SE_00641 chr18 20844983 20846605 1622 261.77