Super Enhancer Details

General details

Super-Enhancer ID:	SE_00641
Genomic locus:	chr18:20792312-20846605
Size/Length:	54293 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_023359
Gene Symbol:	CABLES1
Chromosome:	chr18
TSS:	20715726 (Transcription start site)
TES:	20840434 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00641

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002822	SE_00641	chr18	20792312	20793879	1567	264.87
C002823	SE_00641	chr18	20804830	20812818	7988	2943.7
C002824	SE_00641	chr18	20816576	20819793	3217	2018.55
C002825	SE_00641	chr18	20823098	20825011	1913	185.12
C002826	SE_00641	chr18	20829909	20832050	2141	634.26
C002827	SE_00641	chr18	20836286	20841335	5049	3100
C002828	SE_00641	chr18	20844983	20846605	1622	261.77