Super Enhancer Details

General details

Super-Enhancer ID:	SE_00645
Genomic locus:	chrX:99897948-99941436
Size/Length:	43488 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014467
Gene Symbol:	SRPX2
Chromosome:	chrX
TSS:	99899162 (Transcription start site)
TES:	99926296 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chrX:99897948-99941436
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00645

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006143	SE_00645	chrX	99897948	99909779	11831	3100
C006144	SE_00645	chrX	99913369	99915350	1981	563.05
C006145	SE_00645	chrX	99926368	99930414	4046	1234.47
C006146	SE_00645	chrX	99939974	99941436	1462	103.01