Super Enhancer Details

General details

Super-Enhancer ID:	SE_00646
Genomic locus:	chr6:3795637-3850465
Size/Length:	54828 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012135
Gene Symbol:	FAM50B
Chromosome:	chr6
TSS:	3849631 (Transcription start site)
TES:	3851551 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:3795637-3850465
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00646

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005013	SE_00646	chr6	3795637	3797811	2174	200.73
C005014	SE_00646	chr6	3797911	3799667	1756	157.34
C005015	SE_00646	chr6	3803049	3805239	2190	796.18
C005016	SE_00646	chr6	3805982	3807302	1320	111.09
C005017	SE_00646	chr6	3807639	3810119	2480	845.8
C005018	SE_00646	chr6	3820270	3821640	1370	106.28
C005019	SE_00646	chr6	3822769	3827904	5135	3100
C005020	SE_00646	chr6	3831820	3833402	1582	96.39
C005021	SE_00646	chr6	3834610	3837093	2483	1582.97
C005022	SE_00646	chr6	3846572	3850465	3893	2000.78