Super Enhancer Details

General details

Super-Enhancer ID:	SE_00649
Genomic locus:	chr20:56257900-56300726
Size/Length:	42826 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020182
Gene Symbol:	PMEPA1
Chromosome:	chr20
TSS:	56223447 (Transcription start site)
TES:	56265680 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00649

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003739	SE_00649	chr20	56257900	56258849	949	104.14
C003740	SE_00649	chr20	56262207	56266640	4433	708.33
C003741	SE_00649	chr20	56269722	56271715	1993	254.64
C003742	SE_00649	chr20	56272131	56275782	3651	608.55
C003743	SE_00649	chr20	56276321	56290338	14017	3100
C003744	SE_00649	chr20	56290428	56293845	3417	390.65
C003745	SE_00649	chr20	56299221	56300726	1505	118.61