Super Enhancer Details

General details

Super-Enhancer ID:	SE_00651
Genomic locus:	chr10:3493865-3527206
Size/Length:	33341 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014889
Gene Symbol:	PITRM1
Chromosome:	chr10
TSS:	3179918 (Transcription start site)
TES:	3215033 (Transcription end site)
Strand:	-
Number of Exons:	27
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:3493865-3527206
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00651

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000691	SE_00651	chr10	3493865	3496465	2600	892.81
C000692	SE_00651	chr10	3496664	3498197	1533	170.13
C000693	SE_00651	chr10	3506557	3516194	9637	3100
C000694	SE_00651	chr10	3518893	3521091	2198	434.88
C000695	SE_00651	chr10	3526058	3527206	1148	95.18