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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00652
Genomic locus: chr1:71473240-71514439
Size/Length: 41199 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_198719
Gene Symbol: PTGER3
Chromosome: chr1
TSS: 71436463 (Transcription start site)
TES: 71513491 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00652

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000263 SE_00652 chr1 71473240 71474927 1687 110.64
C000264 SE_00652 chr1 71477037 71478571 1534 100.33
C000265 SE_00652 chr1 71479330 71482074 2744 847.46
C000266 SE_00652 chr1 71482169 71489315 7146 1969.99
C000267 SE_00652 chr1 71492425 71495382 2957 421.54
C000268 SE_00652 chr1 71495595 71499882 4287 2745.27
C000269 SE_00652 chr1 71499906 71501184 1278 126.05
C000270 SE_00652 chr1 71502704 71505262 2558 214.08
C000271 SE_00652 chr1 71505486 71514439 8953 2836.09