Super Enhancer Details

General details

Super-Enhancer ID:	SE_00652
Genomic locus:	chr1:71473240-71514439
Size/Length:	41199 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_198719
Gene Symbol:	PTGER3
Chromosome:	chr1
TSS:	71436463 (Transcription start site)
TES:	71513491 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00652

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000263	SE_00652	chr1	71473240	71474927	1687	110.64
C000264	SE_00652	chr1	71477037	71478571	1534	100.33
C000265	SE_00652	chr1	71479330	71482074	2744	847.46
C000266	SE_00652	chr1	71482169	71489315	7146	1969.99
C000267	SE_00652	chr1	71492425	71495382	2957	421.54
C000268	SE_00652	chr1	71495595	71499882	4287	2745.27
C000269	SE_00652	chr1	71499906	71501184	1278	126.05
C000270	SE_00652	chr1	71502704	71505262	2558	214.08
C000271	SE_00652	chr1	71505486	71514439	8953	2836.09