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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00653
Genomic locus: chr1:55659583-55684301
Size/Length: 24718 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_015306
Gene Symbol: USP24
Chromosome: chr1
TSS: 55532031 (Transcription start site)
TES: 55681039 (Transcription end site)
Strand: -
Number of Exons: 68
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00653

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000184 SE_00653 chr1 55659583 55663468 3885 482.55
C000185 SE_00653 chr1 55668365 55673849 5484 2559.16
C000186 SE_00653 chr1 55674313 55684301 9988 3100