Super Enhancer Details

General details

Super-Enhancer ID:	SE_00654
Genomic locus:	chr1:183838023-183885865
Size/Length:	47842 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001127394
Gene Symbol:	TSEN15
Chromosome:	chr1
TSS:	184020784 (Transcription start site)
TES:	184043344 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:183838023-183885865
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00654

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000556	SE_00654	chr1	183838023	183844635	6612	3100
C000557	SE_00654	chr1	183845030	183847527	2497	813.3
C000558	SE_00654	chr1	183848669	183855196	6527	978.99
C000559	SE_00654	chr1	183857763	183860086	2323	149.11
C000560	SE_00654	chr1	183860222	183863611	3389	1945.06
C000561	SE_00654	chr1	183863845	183865857	2012	167.85
C000562	SE_00654	chr1	183866998	183868302	1304	123.1
C000563	SE_00654	chr1	183870477	183872737	2260	222.48
C000564	SE_00654	chr1	183878849	183881082	2233	265.99
C000565	SE_00654	chr1	183882508	183885865	3357	507.27