Super Enhancer Details

General details

Super-Enhancer ID:	SE_00656
Genomic locus:	chr2:157286927-157329336
Size/Length:	42409 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000408
Gene Symbol:	GPD2
Chromosome:	chr2
TSS:	157292899 (Transcription start site)
TES:	157442915 (Transcription end site)
Strand:	+
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00656

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003448	SE_00656	chr2	157286927	157288394	1467	106.83
C003449	SE_00656	chr2	157290968	157296189	5221	3100
C003450	SE_00656	chr2	157301254	157303096	1842	171.3
C003451	SE_00656	chr2	157311263	157318122	6859	3100
C003452	SE_00656	chr2	157320203	157321260	1057	104.39
C003453	SE_00656	chr2	157322059	157325199	3140	1897.57
C003454	SE_00656	chr2	157327252	157329336	2084	119.94