Super Enhancer Details

General details

Super-Enhancer ID:	SE_00659
Genomic locus:	chr6:88369136-88413478
Size/Length:	44342 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_002767
Gene Symbol:	AKIRIN2-AS1
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:88369136-88413478
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00659

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005155	SE_00659	chr6	88369136	88371812	2676	744.04
C005156	SE_00659	chr6	88374052	88375579	1527	156.63
C005157	SE_00659	chr6	88379344	88382558	3214	206.82
C005158	SE_00659	chr6	88393483	88395454	1971	131.4
C005159	SE_00659	chr6	88402948	88406230	3282	691.27
C005160	SE_00659	chr6	88406793	88413478	6685	3100