Super Enhancer Details

General details

Super-Enhancer ID:	SE_00661
Genomic locus:	chr16:29266281-29331104
Size/Length:	64823 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_002939
Gene Symbol:	SNX29P2
Chromosome:	chr16
TSS:	29313607 (Transcription start site)
TES:	29376380 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00661

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002483	SE_00661	chr16	29266281	29267967	1686	156.51
C002484	SE_00661	chr16	29271399	29274587	3188	715.69
C002485	SE_00661	chr16	29275355	29281707	6352	1355.8
C002486	SE_00661	chr16	29282140	29286568	4428	999.99
C002487	SE_00661	chr16	29298920	29304686	5766	2262.07
C002488	SE_00661	chr16	29310342	29313315	2973	1575.57
C002489	SE_00661	chr16	29321380	29323400	2020	363.31
C002490	SE_00661	chr16	29325215	29327650	2435	293.71
C002491	SE_00661	chr16	29329134	29331104	1970	117.82