Super Enhancer Details

General details

Super-Enhancer ID:	SE_00665
Genomic locus:	chr2:208366466-208427375
Size/Length:	60909 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004379
Gene Symbol:	CREB1
Chromosome:	chr2
TSS:	208394615 (Transcription start site)
TES:	208470284 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:208366466-208427375
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00665

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003566	SE_00665	chr2	208366466	208370387	3921	292.08
C003567	SE_00665	chr2	208377351	208379741	2390	1000.63
C003568	SE_00665	chr2	208392218	208400855	8637	3100
C003569	SE_00665	chr2	208413141	208416636	3495	994.56
C003570	SE_00665	chr2	208420867	208427375	6508	974.93