Super Enhancer Details

General details

Super-Enhancer ID:	SE_00666
Genomic locus:	chr11:128560330-128599656
Size/Length:	39326 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002017
Gene Symbol:	FLI1
Chromosome:	chr11
TSS:	128556429 (Transcription start site)
TES:	128683162 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00666

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001516	SE_00666	chr11	128560330	128561649	1319	128.17
C001517	SE_00666	chr11	128562184	128568987	6803	3100
C001518	SE_00666	chr11	128573396	128581897	8501	1258.19
C001519	SE_00666	chr11	128582366	128584218	1852	127.52
C001520	SE_00666	chr11	128584684	128591399	6715	2538.66
C001521	SE_00666	chr11	128595258	128596444	1186	135.2
C001522	SE_00666	chr11	128598144	128599656	1512	157.1