Super Enhancer Details

General details

Super-Enhancer ID:	SE_00667
Genomic locus:	chr2:161123876-161175132
Size/Length:	51256 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016836
Gene Symbol:	RBMS1
Chromosome:	chr2
TSS:	161128661 (Transcription start site)
TES:	161350318 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00667

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003455	SE_00667	chr2	161123876	161130174	6298	3100
C003456	SE_00667	chr2	161133976	161137229	3253	475.01
C003457	SE_00667	chr2	161137534	161139708	2174	186.17
C003458	SE_00667	chr2	161144737	161152208	7471	2109.42
C003459	SE_00667	chr2	161162790	161164369	1579	105.66
C003460	SE_00667	chr2	161169724	161170722	998	100.31
C003461	SE_00667	chr2	161173245	161175132	1887	167.93