Super Enhancer Details

General details

Super-Enhancer ID:	SE_00669
Genomic locus:	chr15:48827549-48879734
Size/Length:	52185 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000138
Gene Symbol:	FBN1
Chromosome:	chr15
TSS:	48700502 (Transcription start site)
TES:	48937985 (Transcription end site)
Strand:	-
Number of Exons:	66
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00669

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002172	SE_00669	chr15	48827549	48830629	3080	610.44
C002173	SE_00669	chr15	48832548	48835502	2954	2002.28
C002174	SE_00669	chr15	48838136	48841656	3520	739.34
C002175	SE_00669	chr15	48845118	48849288	4170	359.59
C002176	SE_00669	chr15	48849489	48860314	10825	1178.67
C002177	SE_00669	chr15	48862238	48863701	1463	116.74
C002178	SE_00669	chr15	48871110	48876212	5102	996.96
C002179	SE_00669	chr15	48878362	48879734	1372	96.36