Super Enhancer Details

General details

Super-Enhancer ID:	SE_00670
Genomic locus:	chr19:15357481-15421129
Size/Length:	63648 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_058243
Gene Symbol:	BRD4
Chromosome:	chr19
TSS:	15357846 (Transcription start site)
TES:	15391262 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:15357481-15421129
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00670

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002991	SE_00670	chr19	15357481	15364778	7297	3100
C002992	SE_00670	chr19	15374019	15378288	4269	1259.01
C002993	SE_00670	chr19	15384528	15386528	2000	111.06
C002994	SE_00670	chr19	15390250	15396025	5775	1353.51
C002995	SE_00670	chr19	15403508	15406475	2967	527.09
C002996	SE_00670	chr19	15406796	15408531	1735	253.41
C002997	SE_00670	chr19	15420089	15421129	1040	100.82