Super Enhancer Details

General details

Super-Enhancer ID:	SE_00671
Genomic locus:	chr19:4367358-4405486
Size/Length:	38128 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003025
Gene Symbol:	SH3GL1
Chromosome:	chr19
TSS:	4360363 (Transcription start site)
TES:	4400415 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00671

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002931	SE_00671	chr19	4367358	4370687	3329	457.96
C002932	SE_00671	chr19	4370723	4372045	1322	160.22
C002933	SE_00671	chr19	4372603	4377782	5179	3100
C002934	SE_00671	chr19	4379425	4381828	2403	567.55
C002935	SE_00671	chr19	4388036	4389429	1393	228.56
C002936	SE_00671	chr19	4389494	4393276	3782	1953.64
C002937	SE_00671	chr19	4393856	4395175	1319	181.15
C002938	SE_00671	chr19	4396463	4398199	1736	656.34
C002939	SE_00671	chr19	4398835	4400524	1689	1849.52
C002940	SE_00671	chr19	4401026	4402722	1696	1035.82
C002941	SE_00671	chr19	4404587	4405486	899	96.72