Super Enhancer Details

General details

Super-Enhancer ID:	SE_00676
Genomic locus:	chr17:46121806-46152285
Size/Length:	30479 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003204
Gene Symbol:	NFE2L1
Chromosome:	chr17
TSS:	46125685 (Transcription start site)
TES:	46138907 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:46121806-46152285
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00676

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002691	SE_00676	chr17	46121806	46134112	12306	3100
C002692	SE_00676	chr17	46136385	46139565	3180	347.34
C002693	SE_00676	chr17	46139955	46146618	6663	2100.65
C002694	SE_00676	chr17	46146694	46149521	2827	777.58
C002695	SE_00676	chr17	46150996	46152285	1289	144.18