Super Enhancer Details

General details

Super-Enhancer ID:	SE_00693
Genomic locus:	chr10:17028185-17082281
Size/Length:	54096 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004412
Gene Symbol:	TRDMT1
Chromosome:	chr10
TSS:	17184981 (Transcription start site)
TES:	17244070 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00693

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000783	SE_00693	chr10	17028185	17030082	1897	438.57
C000784	SE_00693	chr10	17034467	17035624	1157	122.08
C000785	SE_00693	chr10	17037436	17042957	5521	1559.08
C000786	SE_00693	chr10	17043004	17047067	4063	3100
C000787	SE_00693	chr10	17047666	17052653	4987	1672.88
C000788	SE_00693	chr10	17052679	17053408	729	96.47
C000789	SE_00693	chr10	17064124	17068088	3964	459.29
C000790	SE_00693	chr10	17070425	17072663	2238	760.26
C000791	SE_00693	chr10	17079812	17082281	2469	611.55