Super Enhancer Details

General details

Super-Enhancer ID:	SE_00694
Genomic locus:	chr21:45552639-45628515
Size/Length:	75876 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_198155
Gene Symbol:	C21orf33
Chromosome:	chr21
TSS:	45553493 (Transcription start site)
TES:	45565605 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00694

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003836	SE_00694	chr21	45552639	45556228	3589	2820.25
C003837	SE_00694	chr21	45556304	45562174	5870	3217.62
C003838	SE_00694	chr21	45573343	45575899	2556	328.17
C003839	SE_00694	chr21	45576091	45578704	2613	511.54
C003840	SE_00694	chr21	45578747	45581631	2884	499.24
C003841	SE_00694	chr21	45591173	45593356	2183	225.86
C003842	SE_00694	chr21	45600840	45602383	1543	229.25
C003843	SE_00694	chr21	45610256	45611620	1364	155.31
C003844	SE_00694	chr21	45616149	45617521	1372	110.92
C003845	SE_00694	chr21	45627172	45628515	1343	157.74