Super Enhancer Details

General details

Super-Enhancer ID:	SE_00698
Genomic locus:	chr20:19944354-19992139
Size/Length:	47785 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015585
Gene Symbol:	C20orf26
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00698

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003653	SE_00698	chr20	19944354	19946316	1962	486.29
C003654	SE_00698	chr20	19953180	19960536	7356	3100
C003655	SE_00698	chr20	19964839	19968340	3501	979.06
C003656	SE_00698	chr20	19970685	19972614	1929	154.32
C003657	SE_00698	chr20	19973080	19976949	3869	1704.21
C003658	SE_00698	chr20	19980297	19985279	4982	2144.11
C003659	SE_00698	chr20	19991006	19992139	1133	122.63