Super Enhancer Details

General details

Super-Enhancer ID:	SE_00699
Genomic locus:	chr15:93344490-93377608
Size/Length:	33118 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_037600
Gene Symbol:	LOC100507217
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00699

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002440	SE_00699	chr15	93344490	93346258	1768	529.56
C002441	SE_00699	chr15	93346313	93349694	3381	1304.06
C002442	SE_00699	chr15	93350382	93355263	4881	3100
C002443	SE_00699	chr15	93362566	93364284	1718	518.43
C002444	SE_00699	chr15	93373648	93377608	3960	3100