Super Enhancer Details

General details

Super-Enhancer ID:	SE_00700
Genomic locus:	chr16:85148449-85208751
Size/Length:	60302 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_033984
Gene Symbol:	LOC400548
Chromosome:	chr16
TSS:	85170755 (Transcription start site)
TES:	85183049 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr16:85148449-85208751
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00700

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002554	SE_00700	chr16	85148449	85151234	2785	522.4
C002555	SE_00700	chr16	85156984	85159088	2104	572.2
C002556	SE_00700	chr16	85163025	85165158	2133	1066.38
C002557	SE_00700	chr16	85168688	85172366	3678	1267.86
C002558	SE_00700	chr16	85177433	85178476	1043	94.38
C002559	SE_00700	chr16	85179524	85181462	1938	334.15
C002560	SE_00700	chr16	85184764	85186385	1621	211.98
C002561	SE_00700	chr16	85192087	85197181	5094	2773.66
C002562	SE_00700	chr16	85197948	85202885	4937	1049.17
C002563	SE_00700	chr16	85204680	85208751	4071	1339.62