Super Enhancer Details

General details

Super-Enhancer ID:	SE_00703
Genomic locus:	chr4:108897305-108937926
Size/Length:	40621 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005327
Gene Symbol:	HADH
Chromosome:	chr4
TSS:	108910869 (Transcription start site)
TES:	108956331 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr4:108897305-108937926
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00703

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004541	SE_00703	chr4	108897305	108901262	3957	1849.65
C004542	SE_00703	chr4	108907924	108923024	15100	3100
C004543	SE_00703	chr4	108924592	108925971	1379	126.25
C004544	SE_00703	chr4	108926239	108932010	5771	1990.15
C004545	SE_00703	chr4	108936572	108937926	1354	92.68