Super Enhancer Details

General details

Super-Enhancer ID:	SE_00705
Genomic locus:	chr2:9347019-9404317
Size/Length:	57298 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004763
Gene Symbol:	ITGB1BP1
Chromosome:	chr2
TSS:	9545814 (Transcription start site)
TES:	9563643 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:9347019-9404317
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00705

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003072	SE_00705	chr2	9347019	9349007	1988	405.42
C003073	SE_00705	chr2	9349609	9350790	1181	120.13
C003074	SE_00705	chr2	9351174	9354619	3445	541.86
C003075	SE_00705	chr2	9365222	9366653	1431	139.65
C003076	SE_00705	chr2	9372228	9373765	1537	222.92
C003077	SE_00705	chr2	9373854	9380423	6569	2714.53
C003078	SE_00705	chr2	9390665	9392786	2121	560.16
C003079	SE_00705	chr2	9396161	9404317	8156	3100