Super Enhancer Details

General details

Super-Enhancer ID:	SE_00706
Genomic locus:	chrX:135792153-135865028
Size/Length:	72875 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004840
Gene Symbol:	ARHGEF6
Chromosome:	chrX
TSS:	135747711 (Transcription start site)
TES:	135849551 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00706

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006165	SE_00706	chrX	135792153	135793825	1672	192.31
C006166	SE_00706	chrX	135794761	135796405	1644	165.77
C006167	SE_00706	chrX	135806620	135809216	2596	336.88
C006168	SE_00706	chrX	135809876	135810850	974	101.43
C006169	SE_00706	chrX	135812210	135815318	3108	817.26
C006170	SE_00706	chrX	135815454	135818354	2900	180.01
C006171	SE_00706	chrX	135825310	135832439	7129	1805.2
C006172	SE_00706	chrX	135836761	135837973	1212	104.69
C006173	SE_00706	chrX	135846936	135851263	4327	1764.04
C006174	SE_00706	chrX	135860260	135865028	4768	1972.94