Super Enhancer Details

General details

Super-Enhancer ID:	SE_00707
Genomic locus:	chr5:154119808-154164972
Size/Length:	45164 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_032385
Gene Symbol:	FAXDC2
Chromosome:	chr5
TSS:	154198051 (Transcription start site)
TES:	154230213 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00707

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004935	SE_00707	chr5	154119808	154122023	2215	452.09
C004936	SE_00707	chr5	154123161	154124184	1023	115.4
C004937	SE_00707	chr5	154128096	154129422	1326	187.25
C004938	SE_00707	chr5	154132434	154141616	9182	3100
C004939	SE_00707	chr5	154145578	154147383	1805	236
C004940	SE_00707	chr5	154148249	154154085	5836	1108.52
C004941	SE_00707	chr5	154155062	154156956	1894	212.82
C004942	SE_00707	chr5	154157485	154160844	3359	439.16
C004943	SE_00707	chr5	154161659	154164972	3313	728.03