Super Enhancer Details

General details

Super-Enhancer ID:	SE_00708
Genomic locus:	chr8:131054235-131111206
Size/Length:	56971 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016623
Gene Symbol:	FAM49B
Chromosome:	chr8
TSS:	130851838 (Transcription start site)
TES:	130952118 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00708

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005812	SE_00708	chr8	131054235	131055632	1397	185.07
C005813	SE_00708	chr8	131057605	131059064	1459	144.89
C005814	SE_00708	chr8	131064519	131066321	1802	147.3
C005815	SE_00708	chr8	131072092	131076020	3928	1646.53
C005816	SE_00708	chr8	131086476	131088741	2265	731.86
C005817	SE_00708	chr8	131088822	131094520	5698	2302.22
C005818	SE_00708	chr8	131097012	131098978	1966	211.2
C005819	SE_00708	chr8	131100280	131107203	6923	3123.71
C005820	SE_00708	chr8	131108038	131111206	3168	585.67