Super Enhancer Details

General details

Super-Enhancer ID:	SE_00710
Genomic locus:	chr14:71353119-71403056
Size/Length:	49937 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014982
Gene Symbol:	PCNX
Chromosome:	chr14
TSS:	71374121 (Transcription start site)
TES:	71582099 (Transcription end site)
Strand:	+
Number of Exons:	36
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00710

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002081	SE_00710	chr14	71353119	71354993	1874	491.51
C002082	SE_00710	chr14	71363105	71365994	2889	1066.56
C002083	SE_00710	chr14	71370965	71378752	7787	3100
C002084	SE_00710	chr14	71378987	71380618	1631	144.47
C002085	SE_00710	chr14	71383265	71384686	1421	133.84
C002086	SE_00710	chr14	71385666	71388854	3188	946.06
C002087	SE_00710	chr14	71399771	71403056	3285	2256.52