Super Enhancer Details

General details

Super-Enhancer ID:	SE_00713
Genomic locus:	chr6:151985716-152025486
Size/Length:	39770 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001122742
Gene Symbol:	ESR1
Chromosome:	chr6
TSS:	152128453 (Transcription start site)
TES:	152424408 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00713

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005282	SE_00713	chr6	151985716	151987868	2152	427.1
C005283	SE_00713	chr6	151988164	151991443	3279	1479.67
C005284	SE_00713	chr6	151997095	151999814	2719	517.57
C005285	SE_00713	chr6	152000319	152001401	1082	108.98
C005286	SE_00713	chr6	152001626	152004430	2804	1631.17
C005287	SE_00713	chr6	152010664	152013998	3334	3100
C005288	SE_00713	chr6	152019295	152025486	6191	2402.32