Super Enhancer Details

General details

Super-Enhancer ID:	SE_00715
Genomic locus:	chr9:116348945-116398471
Size/Length:	49526 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_144489
Gene Symbol:	RGS3
Chromosome:	chr9
TSS:	116263706 (Transcription start site)
TES:	116360023 (Transcription end site)
Strand:	+
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00715

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006020	SE_00715	chr9	116348945	116352621	3676	401.06
C006021	SE_00715	chr9	116352865	116354392	1527	182.73
C006022	SE_00715	chr9	116354595	116365571	10976	2609.96
C006023	SE_00715	chr9	116371575	116373277	1702	222.44
C006024	SE_00715	chr9	116375993	116380024	4031	2405.93
C006025	SE_00715	chr9	116381849	116384978	3129	1666.87
C006026	SE_00715	chr9	116388544	116390694	2150	422.19
C006027	SE_00715	chr9	116392823	116394698	1875	116.17
C006028	SE_00715	chr9	116396618	116398471	1853	327.06