Super Enhancer Details

General details

Super-Enhancer ID:	SE_00716
Genomic locus:	chr15:91094775-91155065
Size/Length:	60290 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_022769
Gene Symbol:	CRTC3
Chromosome:	chr15
TSS:	91073117 (Transcription start site)
TES:	91188577 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:91094775-91155065
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00716

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002427	SE_00716	chr15	91094775	91097903	3128	858.57
C002428	SE_00716	chr15	91099362	91106682	7320	3100
C002429	SE_00716	chr15	91106758	91108317	1559	227.63
C002430	SE_00716	chr15	91112814	91115498	2684	392.63
C002431	SE_00716	chr15	91124055	91127434	3379	428.28
C002432	SE_00716	chr15	91128198	91130486	2288	231.55
C002433	SE_00716	chr15	91133443	91138722	5279	1209.5
C002434	SE_00716	chr15	91138723	91142090	3367	800.44
C002435	SE_00716	chr15	91152602	91155065	2463	298.81