Super Enhancer Details

General details

Super-Enhancer ID:	SE_00723
Genomic locus:	chr2:65045462-65094595
Size/Length:	49133 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001193493
Gene Symbol:	SLC1A4
Chromosome:	chr2
TSS:	65215578 (Transcription start site)
TES:	65251000 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00723

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003313	SE_00723	chr2	65045462	65048548	3086	1480.33
C003314	SE_00723	chr2	65057181	65060151	2970	1408.39
C003315	SE_00723	chr2	65063555	65069256	5701	2291.77
C003316	SE_00723	chr2	65078966	65080801	1835	296.96
C003317	SE_00723	chr2	65081634	65082889	1255	103.97
C003318	SE_00723	chr2	65084051	65089167	5116	3100
C003319	SE_00723	chr2	65090782	65094595	3813	1048.19