Super Enhancer Details

General details

Super-Enhancer ID:	SE_00725
Genomic locus:	chr14:102637157-102683113
Size/Length:	45956 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_181302
Gene Symbol:	WDR20
Chromosome:	chr14
TSS:	102606188 (Transcription start site)
TES:	102676867 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00725

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002129	SE_00725	chr14	102637157	102638538	1381	436.83
C002130	SE_00725	chr14	102642680	102645980	3300	1861.33
C002131	SE_00725	chr14	102646194	102656782	10588	3100
C002132	SE_00725	chr14	102659509	102664408	4899	880.32
C002133	SE_00725	chr14	102674627	102677737	3110	574.28
C002134	SE_00725	chr14	102678016	102679177	1161	119.59
C002135	SE_00725	chr14	102679312	102683113	3801	613.72