Super Enhancer Details

General details

Super-Enhancer ID:	SE_00726
Genomic locus:	chr1:12374199-12409312
Size/Length:	35113 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015378
Gene Symbol:	VPS13D
Chromosome:	chr1
TSS:	12290095 (Transcription start site)
TES:	12572098 (Transcription end site)
Strand:	+
Number of Exons:	69
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00726

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000030	SE_00726	chr1	12374199	12378860	4661	3100
C000031	SE_00726	chr1	12379759	12381333	1574	105.2
C000032	SE_00726	chr1	12390525	12391926	1401	96.99
C000033	SE_00726	chr1	12392383	12394730	2347	271.76
C000034	SE_00726	chr1	12396101	12401683	5582	2417.41
C000035	SE_00726	chr1	12403311	12409312	6001	3100