Super Enhancer Details

General details

Super-Enhancer ID:	SE_00735
Genomic locus:	chr8:101934784-101967252
Size/Length:	32468 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001135702
Gene Symbol:	YWHAZ
Chromosome:	chr8
TSS:	101930803 (Transcription start site)
TES:	101965623 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00735

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005769	SE_00735	chr8	101934784	101936208	1424	181.69
C005770	SE_00735	chr8	101936545	101938633	2088	194.1
C005771	SE_00735	chr8	101938801	101939994	1193	118.13
C005772	SE_00735	chr8	101942668	101944909	2241	212.23
C005773	SE_00735	chr8	101946890	101951985	5095	1512.8
C005774	SE_00735	chr8	101952308	101956145	3837	632.13
C005775	SE_00735	chr8	101956157	101957781	1624	134.46
C005776	SE_00735	chr8	101959151	101967252	8101	3100