Super Enhancer Details

General details

Super-Enhancer ID:	SE_00741
Genomic locus:	chr17:1170362-1234434
Size/Length:	64072 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_172367
Gene Symbol:	TUSC5
Chromosome:	chr17
TSS:	1182956 (Transcription start site)
TES:	1204281 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00741

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002568	SE_00741	chr17	1170362	1172187	1825	298.72
C002569	SE_00741	chr17	1181868	1187455	5587	3028.87
C002570	SE_00741	chr17	1189029	1190604	1575	261.23
C002571	SE_00741	chr17	1195580	1197592	2012	171.75
C002572	SE_00741	chr17	1200011	1204389	4378	949.41
C002573	SE_00741	chr17	1215562	1221571	6009	3100
C002574	SE_00741	chr17	1231443	1234434	2991	574.38