Super Enhancer Details

General details

Super-Enhancer ID:	SE_00744
Genomic locus:	chr5:77799632-77874486
Size/Length:	74854 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005779
Gene Symbol:	LHFPL2
Chromosome:	chr5
TSS:	77781037 (Transcription start site)
TES:	77944648 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:77799632-77874486
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00744

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004769	SE_00744	chr5	77799632	77801875	2243	511.67
C004770	SE_00744	chr5	77805907	77807501	1594	90.22
C004771	SE_00744	chr5	77814240	77815681	1441	137.28
C004772	SE_00744	chr5	77818976	77820704	1728	257.75
C004773	SE_00744	chr5	77821170	77826544	5374	1249.04
C004774	SE_00744	chr5	77836084	77837229	1145	96.48
C004775	SE_00744	chr5	77840432	77846428	5996	3100
C004776	SE_00744	chr5	77846453	77848042	1589	192.85
C004777	SE_00744	chr5	77848704	77851479	2775	414.49
C004778	SE_00744	chr5	77862254	77863769	1515	135.06
C004779	SE_00744	chr5	77869533	77870917	1384	199.93
C004780	SE_00744	chr5	77872167	77874486	2319	410.14