Super Enhancer Details

General details

Super-Enhancer ID:	SE_00746
Genomic locus:	chr10:102093003-102135729
Size/Length:	42726 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005063
Gene Symbol:	SCD
Chromosome:	chr10
TSS:	102106771 (Transcription start site)
TES:	102124588 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00746

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001014	SE_00746	chr10	102093003	102095238	2235	294.69
C001015	SE_00746	chr10	102100618	102102755	2137	218.1
C001016	SE_00746	chr10	102105232	102109113	3881	787.53
C001017	SE_00746	chr10	102109300	102112065	2765	384.57
C001018	SE_00746	chr10	102118532	102120491	1959	253.96
C001019	SE_00746	chr10	102121779	102125853	4074	635.34
C001020	SE_00746	chr10	102129660	102135729	6069	3100