Super Enhancer Details

General details

Super-Enhancer ID:	SE_00747
Genomic locus:	chr3:45034599-45108085
Size/Length:	73486 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003278
Gene Symbol:	CLEC3B
Chromosome:	chr3
TSS:	45067758 (Transcription start site)
TES:	45077563 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:45034599-45108085
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00747

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004102	SE_00747	chr3	45034599	45036093	1494	119.17
C004103	SE_00747	chr3	45036275	45039306	3031	577.67
C004104	SE_00747	chr3	45042957	45045735	2778	243.63
C004105	SE_00747	chr3	45051578	45055181	3603	2112.22
C004106	SE_00747	chr3	45058816	45060553	1737	167.93
C004107	SE_00747	chr3	45062245	45063496	1251	108.7
C004108	SE_00747	chr3	45066020	45072341	6321	3100
C004109	SE_00747	chr3	45075525	45078929	3404	578.3
C004110	SE_00747	chr3	45082665	45084215	1550	154.18
C004111	SE_00747	chr3	45095663	45097718	2055	370.94
C004112	SE_00747	chr3	45105467	45108085	2618	333.66