Super Enhancer Details

General details

Super-Enhancer ID:	SE_00752
Genomic locus:	chr17:75367792-75427155
Size/Length:	59363 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001113493
Gene Symbol:	SEPT9
Chromosome:	chr17
TSS:	75450074 (Transcription start site)
TES:	75496678 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00752

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002759	SE_00752	chr17	75367792	75371553	3761	1104.32
C002760	SE_00752	chr17	75379427	75386768	7341	1726.46
C002761	SE_00752	chr17	75386897	75389846	2949	605
C002762	SE_00752	chr17	75390032	75391185	1153	90.04
C002763	SE_00752	chr17	75395714	75397362	1648	236.45
C002764	SE_00752	chr17	75400739	75402256	1517	145.11
C002765	SE_00752	chr17	75404662	75407921	3259	397.85
C002766	SE_00752	chr17	75416167	75418394	2227	187.55
C002767	SE_00752	chr17	75418658	75425369	6711	3100
C002768	SE_00752	chr17	75425774	75427155	1381	180.19