Super Enhancer Details

General details

Super-Enhancer ID:	SE_00760
Genomic locus:	chr3:50618755-50657522
Size/Length:	38767 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_013324
Gene Symbol:	CISH
Chromosome:	chr3
TSS:	50643884 (Transcription start site)
TES:	50649262 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00760

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004117	SE_00760	chr3	50618755	50623108	4353	2022.52
C004118	SE_00760	chr3	50627638	50628999	1361	136.32
C004119	SE_00760	chr3	50636720	50645111	8391	3100
C004120	SE_00760	chr3	50645518	50651734	6216	1878.54
C004121	SE_00760	chr3	50653136	50657522	4386	844.71