Super Enhancer Details

General details

Super-Enhancer ID:	SE_00762
Genomic locus:	chr3:58020057-58086120
Size/Length:	66063 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001164318
Gene Symbol:	FLNB
Chromosome:	chr3
TSS:	57994126 (Transcription start site)
TES:	58157982 (Transcription end site)
Strand:	+
Number of Exons:	47
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:58020057-58086120
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00762

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004136	SE_00762	chr3	58020057	58022199	2142	217.56
C004137	SE_00762	chr3	58026357	58028180	1823	127.64
C004138	SE_00762	chr3	58028557	58031910	3353	1038.77
C004139	SE_00762	chr3	58032174	58039716	7542	3100
C004140	SE_00762	chr3	58044307	58046039	1732	190.2
C004141	SE_00762	chr3	58047587	58049641	2054	182.62
C004142	SE_00762	chr3	58058921	58060520	1599	180.96
C004143	SE_00762	chr3	58066569	58073019	6450	1294.25
C004144	SE_00762	chr3	58084567	58086120	1553	257.03