Super Enhancer Details

General details

Super-Enhancer ID:	SE_00764
Genomic locus:	chr1:29472186-29509898
Size/Length:	37712 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005626
Gene Symbol:	SRSF4
Chromosome:	chr1
TSS:	29474249 (Transcription start site)
TES:	29508637 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:29472186-29509898
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00764

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000120	SE_00764	chr1	29472186	29473874	1688	399.87
C000121	SE_00764	chr1	29483019	29483956	937	92.7
C000122	SE_00764	chr1	29487634	29489398	1764	141.46
C000123	SE_00764	chr1	29491299	29494051	2752	467.17
C000124	SE_00764	chr1	29495615	29499167	3552	949.5
C000125	SE_00764	chr1	29501997	29509898	7901	3100