Super Enhancer Details

General details

Super-Enhancer ID:	SE_00767
Genomic locus:	chr13:52295049-52345195
Size/Length:	50146 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001031719
Gene Symbol:	DHRS12
Chromosome:	chr13
TSS:	52342128 (Transcription start site)
TES:	52378298 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr13:52295049-52345195
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00767

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001855	SE_00767	chr13	52295049	52297232	2183	423.8
C001856	SE_00767	chr13	52302924	52306588	3664	2795.97
C001857	SE_00767	chr13	52307223	52308592	1369	185.83
C001858	SE_00767	chr13	52312655	52318337	5682	3100
C001859	SE_00767	chr13	52320445	52322124	1679	181.07
C001860	SE_00767	chr13	52330063	52332029	1966	242.02
C001861	SE_00767	chr13	52333184	52335458	2274	552.02
C001862	SE_00767	chr13	52337181	52340348	3167	1664.97
C001863	SE_00767	chr13	52343214	52345195	1981	365.52