Super Enhancer Details

General details

Super-Enhancer ID:	SE_00768
Genomic locus:	chr11:35155822-35214990
Size/Length:	59168 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000610
Gene Symbol:	CD44
Chromosome:	chr11
TSS:	35160416 (Transcription start site)
TES:	35253949 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:35155822-35214990
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00768

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001199	SE_00768	chr11	35155822	35157946	2124	336.26
C001200	SE_00768	chr11	35159298	35167773	8475	2228.05
C001201	SE_00768	chr11	35171656	35174007	2351	170.18
C001202	SE_00768	chr11	35178936	35181780	2844	755.21
C001203	SE_00768	chr11	35183057	35193176	10119	904.03
C001204	SE_00768	chr11	35194146	35197284	3138	409.88
C001205	SE_00768	chr11	35200687	35202619	1932	135.28
C001206	SE_00768	chr11	35212359	35214990	2631	459.8