Super Enhancer Details

General details

Super-Enhancer ID:	SE_00773
Genomic locus:	chr12:52278537-52320082
Size/Length:	41545 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000020
Gene Symbol:	ACVRL1
Chromosome:	chr12
TSS:	52306112 (Transcription start site)
TES:	52317145 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:52278537-52320082
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00773

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001650	SE_00773	chr12	52278537	52279770	1233	185.51
C001651	SE_00773	chr12	52279848	52281059	1211	256.71
C001652	SE_00773	chr12	52288464	52289501	1037	133.81
C001653	SE_00773	chr12	52289874	52292250	2376	441.25
C001654	SE_00773	chr12	52293722	52295081	1359	94.94
C001655	SE_00773	chr12	52298273	52308410	10137	3100
C001656	SE_00773	chr12	52310721	52313099	2378	472.07
C001657	SE_00773	chr12	52314771	52318901	4130	1817.23
C001658	SE_00773	chr12	52319040	52320082	1042	133.2