Super Enhancer Details

General details

Super-Enhancer ID:	SE_00776
Genomic locus:	chr15:64188029-64244705
Size/Length:	56676 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003922
Gene Symbol:	HERC1
Chromosome:	chr15
TSS:	63900816 (Transcription start site)
TES:	64126147 (Transcription end site)
Strand:	-
Number of Exons:	78
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00776

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002276	SE_00776	chr15	64188029	64190494	2465	915.59
C002277	SE_00776	chr15	64190706	64195425	4719	914.32
C002278	SE_00776	chr15	64196521	64202778	6257	1579.07
C002279	SE_00776	chr15	64208296	64210788	2492	262.49
C002280	SE_00776	chr15	64215767	64219154	3387	443.45
C002281	SE_00776	chr15	64220332	64221907	1575	176.51
C002282	SE_00776	chr15	64229637	64234972	5335	1749.63
C002283	SE_00776	chr15	64235960	64237590	1630	106.44
C002284	SE_00776	chr15	64241874	64244705	2831	447.15